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Proceedings of the National Academy of Sciences (PNAS)2018ResearchNon-viral Gene Delivery

mRNA vaccination with charge-altering releasable transporters elicits human T cell responses and cures established tumors in mice

Ole A. W. Haabeth, Timothy R. Blake, Colin J. Mckinlay, Robert M. Waymouth, Paul A. Wender, Ronald LevyDOI 10.1073/pnas.1810026115
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Summary

mRNA-based cancer vaccination is a promising approach for personalised immunotherapy, but safe and effective mRNA delivery remains a major challenge due to mRNA's instability and poor cell membrane permeability. While lipid nanoparticles (LNPs) are the primary delivery strategy, they have limitations with respect to pharmacokinetics, biodistribution, and toxicity. A dynamic delivery system with a controllable charge-altering degradation. ### Human PBMC Transfection & T Cell Activation | Cell Type | GFP Transfection Efficiency | |---------------|--------------------------------| | Dendritic cells (DCs) | ~50% | | Monocytes | ~75% | | B cells | ~25% | |.

Purpose: mRNA-based cancer vaccination is a promising approach for personalised immunotherapy, but safe and effective mRNA delivery remains a major challenge due to mRNA's instability and poor cell membrane permeability. While lipid nanoparticles (LNPs) are the primary delivery strategy, they have limitations with respect to pharmacokinetics, biodistribution, and toxicity. A dynamic delivery system with a controllable charge-altering degradation mechanism could enable efficient mRNA delivery, endosomal escape, and translation without the toxicity concerns of cationic materials.
Hypothesis: Charge-altering releasable transporters (CARTs) can deliver antigen-encoding mRNA to antigen-presenting cells (APCs) efficiently and safely. CARTs coformulated with mRNA and a TLR ligand (CpG) will transfect and activate target cells simultaneously, inducing robust antigen-specific T cell responses in human PBMCs and therapeutic antitumor immunity capable of curing established tumours in mice.
Aims: 1. Demonstrate CART-mediated transfection of primary human PBMCs (dendritic cells, monocytes, B cells, T cells) using GFP mRNA and activation of CMV-specific T cells using hCMV pp65 mRNA 2. Characterise in vivo biodistribution of CART/mRNA complexes via i.v. and s.c. routes using luciferase reporter and fluorescently labelled CARTs 3. Evaluate the therapeutic efficacy of mRNA-CART vaccines in prophylactic and established tumour models using OVA-expressing A20 lymphoma 4. Characterise the immune response induced by mRNA-CART vaccination, including T cell activation, cytotoxicity, and antigen-specific recall responses 5. Compare mRNA-CART vaccines to alternative adjuvants and delivery strategies
Delivery system:

Component: Delivery Vehicle; Description: Charge-altering releasable transporters (CARTs) — cationic polymer with carbonate and aminoester groups; degrades via charge-altering mechanism (polycationic → neutral small molecules), enabling endosomal escape and mRNA release

Component: CART Composition; Description: D13:A11 (12 dodecyl carbonate monomers + 14 cationic aminoester monomers); prepared via ring-opening polymerisation using benzyl alcohol initiator

Component: Fluorescent CART; Description: BDK-CART — difluoroboron-β-diketonate fluorophore installed as initiator; ~1,000 fluorophores per mRNA molecule

Component: Payload; Description: • mRNA: Fluc (firefly luciferase), OVA, eGFP, SEAP, hCMV pp65, CD80, CD86 — capped, polyadenylated, 5-methoxyuridine-modified (Trilink)<br>• Adjuvant: CpG (TLR9 agonist; class B or C) — coformulated with mRNA into CART nanoparticles

Component: Formulation; Description: CART:mRNA at 10:1 cation:anion ratio in acidic PBS (pH 5.5); CpG premixed with mRNA; 20 s mixing; immediate injection

Component: Particle Properties; Description: Nanoparticle complexes; BDK-CART fluorescence correlates with Cy5-mRNA uptake and GFP expression

Component: Cell Types; Description: Human PBMCs (donors), HeLa cells, DC2.4 (murine DC line), A20-OVA lymphoma (BALB/c), CT26 colon carcinoma

Component: Mouse Models; Description: BALB/c; A20-OVA lymphoma (s.c. tumour model); C57BL/6-Tg(TcraTcrb)1100Mjb/J (OT-I)

Approach:

Parameter: Human T Cell Activation; Details: PBMCs from HLA-A02:01+ donors (CMV+ and CMV−); treated with hCMV pp65 mRNA-CARTs, naked mRNA, irrelevant mRNA-CART, or viral peptide mix; CD8 T cell activation measured by CD69, CD137, CD70; tetramer staining (NLVPMVATV)

Parameter: In Vivo Biodistribution; Details: Fluc mRNA-CARTs via i.v. or s.c.; IVIS bioluminescence imaging at 0.5-24 h; BDK-CART flow cytometry (spleen, blood, skin, lymph nodes)

Parameter: Prophylactic Vaccination; Details: Same-day tumour inoculation + vaccination; A20-OVA cells (10⁷) + s.c. vaccine at distant site; tumour growth and survival monitored >80 d

Parameter: Established Tumour Therapy; Details: Tumours established to medium (50-100 mm³) or large (>100 mm³); 3 doses (days 7, 11, 14 or 10, 13, 17); 3 μg OVA-mRNA + 5 μg CpG in CARTs

Parameter: Vaccine Components Tested; Details: mRNA-CART + CpG, mRNA-CART (no CpG), CART alone, CART + CpG (no mRNA), naked mRNA + CpG (no CART), resiquimod (TLR7), DMXAA (STING), anti-CD40, OVA protein + LPS

Parameter: Rechallenge Experiment; Details: Mice that rejected primary tumour rechallenged with A20-OVA on day 30; T cells isolated for cytotoxicity assays

Parameter: Sample Sizes; Details: n=5-10 per group

Parameter: Statistical Tests; Details: Nonparametric Mann-Whitney U test (tumour growth); Kaplan-Meier log-rank test (survival); P < 0.05 considered significant

Key methods:

Analysis Category: Transfection Efficiency; Methods: Flow cytometry: GFP expression in PBMC subsets (DC, monocyte, B cell, CD4⁺, CD8⁺ T cells); HeLa cells (GFP)

Analysis Category: T Cell Activation (Human); Methods: Flow cytometry: CD69, CD137, CD70; HLA-A02:01 CMV pp65 tetramer (NLVPMVATV)

Analysis Category: In Vivo Imaging; Methods: IVIS 100 bioluminescence (D-luciferin i.p.); Living Image software

Analysis Category: Biodistribution; Methods: BDK-CART flow cytometry; Cy5-mRNA correlation; cell phenotype markers (CD11c, CD11b, B220, CD3, CD4, CD8, lineage-negative)

Analysis Category: DC Activation; Methods: HLA-DR expression by flow cytometry (human DCs)

Analysis Category: T Cell Proliferation; Methods: CellTrace Violet dye (VTD) dilution; coculture with mitomycin C-treated Ag⁺ or Ag⁻ target cells

Analysis Category: T Cell Reactivation; Methods: CD69 up-regulation after 24 h coculture with Ag⁺/Ag⁻ targets; IFNγ intracellular staining

Analysis Category: Cytotoxicity; Methods: 18 h coculture (10:1 effector:target); 7-AAD staining of target cell death

Analysis Category: Antibody Detection; Methods: ELISA: OVA-specific IgG1, IgG2a, IgG2b, IgG2c in sera

Key results: ### Human PBMC Transfection & T Cell Activation

Cell Type: Dendritic cells (DCs); GFP Transfection Efficiency: ~50%

Cell Type: Monocytes; GFP Transfection Efficiency: ~75%

Cell Type: B cells; GFP Transfection Efficiency: ~25%

Cell Type: CD4⁺ T cells; GFP Transfection Efficiency: ~10%

Cell Type: CD8⁺ T cells; GFP Transfection Efficiency: ~20%

Cell Type: Lineage-negative cells; GFP Transfection Efficiency: ~20%

Cell Type: Donor; GFP Transfection Efficiency: CMV Status; Tetramer⁺ CD8 T cells; Activation with hCMV mRNA-CART

Cell Type: No. 30; GFP Transfection Efficiency: CMV⁺; Substantial; Robust (CD69⁺CD137⁺)

Cell Type: No. 34; GFP Transfection Efficiency: CMV⁺; Small; Robust

Cell Type: No. 52; GFP Transfection Efficiency: CMV⁻; None; None

Cell Type: Comparison; GFP Transfection Efficiency: -; -; mRNA-CART > viral peptide mix > naked mRNA > irrelevant CART

In Vivo Biodistribution:

Route: s.c.; Peak Expression Time: 4 h; Primary Location: Localised at injection site

Route: i.v.; Peak Expression Time: 8 h; Primary Location: Spleen and lymph nodes (almost exclusively)

Route: Cellular uptake (BDK-CART); Peak Expression Time: Monocytes > DCs > B cells; Primary Location: Spleen, circulation, skin

Route: Transfected cells in draining lymph nodes; Peak Expression Time: 24 h post-s.c.; Primary Location: eGFP⁺ monocytes and DCs

Vaccine Component Comparison (Prophylactic, Day 0 Tumour Inoculation + Vaccine):

Formulation: mRNA-CART + CpG; Tumour Protection: Strongest (8/8 protected); Significance: Best

Formulation: mRNA-CART (no CpG); Tumour Protection: Moderate; Significance: Inferior to +CpG

Formulation: CART + CpG (no mRNA); Tumour Protection: None; Significance: No effect

Formulation: Naked mRNA + CpG; Tumour Protection: None; Significance: No effect (CART required)

Formulation: Resiquimod (TLR7); Tumour Protection: Moderate; Significance: Inferior to CpG

Formulation: DMXAA (STING); Tumour Protection: Moderate; Significance: Inferior to CpG

Formulation: Anti-CD40; Tumour Protection: Moderate; Significance: Best alternative

Formulation: OVA protein + LPS; Tumour Protection: Moderate; Significance: Inferior to mRNA-CART

Established Tumour Therapy (3 Doses):

Tumour Size: Medium (50-100 mm³); Treatment: mRNA-CART + CpG; Complete Regression: 8/10 (80%); Median Survival: >75 d

Tumour Size: Medium; Treatment: CpG only; Complete Regression: 0/10; Median Survival: ~25 d

Tumour Size: Large (>100 mm³); Treatment: mRNA-CART + CpG; Complete Regression: 2/5 (40%); Median Survival: Significantly prolonged

Tumour Size: Large; Treatment: CpG only; Complete Regression: 0/5; Median Survival: No survival

Tumour Size: i.v. administration; Treatment: mRNA-CART + CpG (medium); Complete Regression: 5/5 (100%); Median Survival: >75 d

Tumour Size: i.v. administration; Treatment: mRNA-CART + CpG (large); Complete Regression: 2/5 (40%); Median Survival: Significantly prolonged

Immune Response Characterisation:

Parameter: Antigen-specific antibodies (IgG); Result: Trace amounts (vs. high titers with OVA protein + LPS)

Parameter: Antigen-specific CD4⁺ T cell proliferation; Result: Robust (Ag⁺ vs. Ag⁻ targets)

Parameter: Antigen-specific CD8⁺ T cell proliferation; Result: Robust

Parameter: CD69 up-regulation (CD4⁺/CD8⁺); Result: Ag-specific

Parameter: CD8⁺ T cell cytotoxicity (A20-OVA); Result: Strong

Parameter: CD8⁺ T cell cytotoxicity (wild-type A20); Result: Strong (shared antigens)

Parameter: CD8⁺ T cell cytotoxicity (CT26, irrelevant); Result: None

Parameter: Rechallenge protection; Result: Complete rejection (5/5)

Parameter: Naive mice (no prior treatment); Result: Tumour development (5/5)

Interpretation: The authors conclude that "CARTs are remarkably effective in delivering customised functional mRNAs to APCs of the immune system," and that "our delivery system and vaccination methodology represent an attractive alternative to existing LNP vaccination platforms." They demonstrate that mRNA-CART vaccines "cure established tumours" with 80% complete regression in medium-sized tumours and 40% in large tumours, using only three low doses of 3 μg mRNA + 5 μg CpG. The authors emphasise that "CARTs are a unique class of tunable, nontoxic, and dynamic delivery agents for mRNA vaccines that address the limitations of existing approaches and have clinical promise for the treatment of established tumours."
10. Limitations (Explicitly Stated or Evident):

1. Model antigen (OVA) and single tumour model: The study uses OVA as a model antigen in A20 lymphoma; efficacy against non-OVA tumour antigens or in other cancer types was not demonstrated.

2. Immunogenicity of OVA: OVA is highly immunogenic; translation to poorly immunogenic tumour-associated antigens or neoantigens may yield different results.

3. No direct comparison to other mRNA delivery platforms: While CARTs are compared to Lipofectamine and to naked mRNA, they are not directly benchmarked against leading LNP formulations in the same in vivo tumour model.

4. Preferential T cell response over antibody response: The mRNA-CART vaccine primarily induced T cell responses with "only trace amounts" of antigen-specific antibodies; this may limit efficacy against tumours that require antibody-mediated mechanisms.

5. Tumour model is lymphoma: A20 is a B cell lymphoma that may be more susceptible to immune attack than solid tumours with dense stroma or immunosuppressive microenvironments.

6. No mechanistic studies on antigen cross-presentation: The study does not definitively demonstrate whether CD8⁺ T cell responses are primed via direct transfection of DCs vs. cross-presentation.

7. CART dosing not optimised: Only one CART formulation and dose were tested; optimisation of CART composition, dose, and schedule may further improve efficacy.

8. CpG dependence: The vaccine required CpG adjuvant; patients who are poor CpG responders or who have TLR9 polymorphisms may not benefit equally.

9. No toxicity data beyond prior work: While prior publications report low toxicity, this study does not include detailed toxicity assessment of multiple dosing in tumour-bearing mice.

10. Mouse model limitations: All experiments were performed in immunocompetent BALB/c mice with an implanted tumour; the model does not recapitulate the complexity of human cancer or the patient's prior therapy history.

11. CD4⁺ T cell cytotoxicity: The study observed antigen-restricted CD4⁺ T cell cytotoxicity, but the functional relevance of this observation was not fully explored.

12. No evaluation of T cell exhaustion or persistence: The study did not assess whether cured mice develop functional memory T cells beyond the rechallenge experiment or whether T cells show signs of exhaustion.

Report prepared based on the published PNAS article. For full experimental details, supplementary figures, and complete references, please refer to the original publication.

mRNA vaccination with charge-altering releasable transporters elicits human T cell responses and cures established tumors in mice | Brilliant Blue Biosciences