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Proceedings of the National Academy of Sciences (PNAS)2018ResearchNon-viral Gene Delivery

mRNA vaccination with charge-altering releasable transporters elicits human T cell responses and cures established tumors in mice

Ole A. W. Haabeth, Timothy R. Blake, Colin J. Mckinlay, Robert M. Waymouth, Paul A. Wender, Ronald LevyDOI 10.1073/pnas.1810026115

Summary

mRNA-based cancer vaccination is a promising approach for personalized immunotherapy, but safe and effective mRNA delivery remains a major challenge due to mRNA's instability and poor cell membrane permeability. While lipid nanoparticles (LNPs) are the primary delivery strategy, they have limitations with respect to pharmacokinetics, biodistribution, and toxicity. A dynamic delivery system with a controllable charge-altering degradation. ### Human PBMC Transfection & T Cell Activation | Cell Type | GFP Transfection Efficiency | |---------------|--------------------------------| | Dendritic cells (DCs) | ~50% | | Monocytes | ~75% | | B cells | ~25% | |.

Purpose: mRNA-based cancer vaccination is a promising approach for personalized immunotherapy, but safe and effective mRNA delivery remains a major challenge due to mRNA's instability and poor cell membrane permeability. While lipid nanoparticles (LNPs) are the primary delivery strategy, they have limitations with respect to pharmacokinetics, biodistribution, and toxicity. A dynamic delivery system with a controllable charge-altering degradation mechanism could enable efficient mRNA delivery, endosomal escape, and translation without the toxicity concerns of cationic materials.
Hypothesis: Charge-altering releasable transporters (CARTs) can deliver antigen-encoding mRNA to antigen-presenting cells (APCs) efficiently and safely. CARTs coformulated with mRNA and a TLR ligand (CpG) will transfect and activate target cells simultaneously, inducing robust antigen-specific T cell responses in human PBMCs and therapeutic antitumor immunity capable of curing established tumors in mice.
Aims: 1. Demonstrate CART-mediated transfection of primary human PBMCs (dendritic cells, monocytes, B cells, T cells) using GFP mRNA and activation of CMV-specific T cells using hCMV pp65 mRNA 2. Characterize in vivo biodistribution of CART/mRNA complexes via i.v. and s.c. routes using luciferase reporter and fluorescently labeled CARTs 3. Evaluate the therapeutic efficacy of mRNA-CART vaccines in prophylactic and established tumor models using OVA-expressing A20 lymphoma 4. Characterize the immune response induced by mRNA-CART vaccination, including T cell activation, cytotoxicity, and antigen-specific recall responses 5. Compare mRNA-CART vaccines to alternative adjuvants and delivery strategies
Delivery system:

Component: Delivery Vehicle; Description: Charge-altering releasable transporters (CARTs) — cationic polymer with carbonate and aminoester groups; degrades via charge-altering mechanism (polycationic → neutral small molecules), enabling endosomal escape and mRNA release

Component: CART Composition; Description: D13:A11 (12 dodecyl carbonate monomers + 14 cationic aminoester monomers); prepared via ring-opening polymerization using benzyl alcohol initiator

Component: Fluorescent CART; Description: BDK-CART — difluoroboron-β-diketonate fluorophore installed as initiator; ~1,000 fluorophores per mRNA molecule

Component: Payload; Description: • mRNA: Fluc (firefly luciferase), OVA, eGFP, SEAP, hCMV pp65, CD80, CD86 — capped, polyadenylated, 5-methoxyuridine-modified (Trilink)<br>• Adjuvant: CpG (TLR9 agonist; class B or C) — coformulated with mRNA into CART nanoparticles

Component: Formulation; Description: CART:mRNA at 10:1 cation:anion ratio in acidic PBS (pH 5.5); CpG premixed with mRNA; 20 s mixing; immediate injection

Component: Particle Properties; Description: Nanoparticle complexes; BDK-CART fluorescence correlates with Cy5-mRNA uptake and GFP expression

Component: Cell Types; Description: Human PBMCs (donors), HeLa cells, DC2.4 (murine DC line), A20-OVA lymphoma (BALB/c), CT26 colon carcinoma

Component: Mouse Models; Description: BALB/c; A20-OVA lymphoma (s.c. tumor model); C57BL/6-Tg(TcraTcrb)1100Mjb/J (OT-I)

Approach:

Parameter: Human T Cell Activation; Details: PBMCs from HLA-A02:01+ donors (CMV+ and CMV−); treated with hCMV pp65 mRNA-CARTs, naked mRNA, irrelevant mRNA-CART, or viral peptide mix; CD8 T cell activation measured by CD69, CD137, CD70; tetramer staining (NLVPMVATV)

Parameter: In Vivo Biodistribution; Details: Fluc mRNA-CARTs via i.v. or s.c.; IVIS bioluminescence imaging at 0.5-24 h; BDK-CART flow cytometry (spleen, blood, skin, lymph nodes)

Parameter: Prophylactic Vaccination; Details: Same-day tumor inoculation + vaccination; A20-OVA cells (10⁷) + s.c. vaccine at distant site; tumor growth and survival monitored >80 d

Parameter: Established Tumor Therapy; Details: Tumors established to medium (50-100 mm³) or large (>100 mm³); 3 doses (days 7, 11, 14 or 10, 13, 17); 3 μg OVA-mRNA + 5 μg CpG in CARTs

Parameter: Vaccine Components Tested; Details: mRNA-CART + CpG, mRNA-CART (no CpG), CART alone, CART + CpG (no mRNA), naked mRNA + CpG (no CART), resiquimod (TLR7), DMXAA (STING), anti-CD40, OVA protein + LPS

Parameter: Rechallenge Experiment; Details: Mice that rejected primary tumor rechallenged with A20-OVA on day 30; T cells isolated for cytotoxicity assays

Parameter: Sample Sizes; Details: n=5-10 per group

Parameter: Statistical Tests; Details: Nonparametric Mann-Whitney U test (tumor growth); Kaplan-Meier log-rank test (survival); P < 0.05 considered significant

Key methods:

Analysis Category: Transfection Efficiency; Methods: Flow cytometry: GFP expression in PBMC subsets (DC, monocyte, B cell, CD4⁺, CD8⁺ T cells); HeLa cells (GFP)

Analysis Category: T Cell Activation (Human); Methods: Flow cytometry: CD69, CD137, CD70; HLA-A02:01 CMV pp65 tetramer (NLVPMVATV)

Analysis Category: In Vivo Imaging; Methods: IVIS 100 bioluminescence (D-luciferin i.p.); Living Image software

Analysis Category: Biodistribution; Methods: BDK-CART flow cytometry; Cy5-mRNA correlation; cell phenotype markers (CD11c, CD11b, B220, CD3, CD4, CD8, lineage-negative)

Analysis Category: DC Activation; Methods: HLA-DR expression by flow cytometry (human DCs)

Analysis Category: T Cell Proliferation; Methods: CellTrace Violet dye (VTD) dilution; coculture with mitomycin C-treated Ag⁺ or Ag⁻ target cells

Analysis Category: T Cell Reactivation; Methods: CD69 up-regulation after 24 h coculture with Ag⁺/Ag⁻ targets; IFNγ intracellular staining

Analysis Category: Cytotoxicity; Methods: 18 h coculture (10:1 effector:target); 7-AAD staining of target cell death

Analysis Category: Antibody Detection; Methods: ELISA: OVA-specific IgG1, IgG2a, IgG2b, IgG2c in sera

Key results: ### Human PBMC Transfection & T Cell Activation

Cell Type: Dendritic cells (DCs); GFP Transfection Efficiency: ~50%

Cell Type: Monocytes; GFP Transfection Efficiency: ~75%

Cell Type: B cells; GFP Transfection Efficiency: ~25%

Cell Type: CD4⁺ T cells; GFP Transfection Efficiency: ~10%

Cell Type: CD8⁺ T cells; GFP Transfection Efficiency: ~20%

Cell Type: Lineage-negative cells; GFP Transfection Efficiency: ~20%

Cell Type: Donor; GFP Transfection Efficiency: CMV Status; Tetramer⁺ CD8 T cells; Activation with hCMV mRNA-CART

Cell Type: No. 30; GFP Transfection Efficiency: CMV⁺; Substantial; Robust (CD69⁺CD137⁺)

Cell Type: No. 34; GFP Transfection Efficiency: CMV⁺; Small; Robust

Cell Type: No. 52; GFP Transfection Efficiency: CMV⁻; None; None

Cell Type: Comparison; GFP Transfection Efficiency: -; -; mRNA-CART > viral peptide mix > naked mRNA > irrelevant CART

In Vivo Biodistribution:

Route: s.c.; Peak Expression Time: 4 h; Primary Location: Localized at injection site

Route: i.v.; Peak Expression Time: 8 h; Primary Location: Spleen and lymph nodes (almost exclusively)

Route: Cellular uptake (BDK-CART); Peak Expression Time: Monocytes > DCs > B cells; Primary Location: Spleen, circulation, skin

Route: Transfected cells in draining lymph nodes; Peak Expression Time: 24 h post-s.c.; Primary Location: eGFP⁺ monocytes and DCs

Vaccine Component Comparison (Prophylactic, Day 0 Tumor Inoculation + Vaccine):

Formulation: mRNA-CART + CpG; Tumor Protection: Strongest (8/8 protected); Significance: Best

Formulation: mRNA-CART (no CpG); Tumor Protection: Moderate; Significance: Inferior to +CpG

Formulation: CART + CpG (no mRNA); Tumor Protection: None; Significance: No effect

Formulation: Naked mRNA + CpG; Tumor Protection: None; Significance: No effect (CART required)

Formulation: Resiquimod (TLR7); Tumor Protection: Moderate; Significance: Inferior to CpG

Formulation: DMXAA (STING); Tumor Protection: Moderate; Significance: Inferior to CpG

Formulation: Anti-CD40; Tumor Protection: Moderate; Significance: Best alternative

Formulation: OVA protein + LPS; Tumor Protection: Moderate; Significance: Inferior to mRNA-CART

Established Tumor Therapy (3 Doses):

Tumor Size: Medium (50-100 mm³); Treatment: mRNA-CART + CpG; Complete Regression: 8/10 (80%); Median Survival: >75 d

Tumor Size: Medium; Treatment: CpG only; Complete Regression: 0/10; Median Survival: ~25 d

Tumor Size: Large (>100 mm³); Treatment: mRNA-CART + CpG; Complete Regression: 2/5 (40%); Median Survival: Significantly prolonged

Tumor Size: Large; Treatment: CpG only; Complete Regression: 0/5; Median Survival: No survival

Tumor Size: i.v. administration; Treatment: mRNA-CART + CpG (medium); Complete Regression: 5/5 (100%); Median Survival: >75 d

Tumor Size: i.v. administration; Treatment: mRNA-CART + CpG (large); Complete Regression: 2/5 (40%); Median Survival: Significantly prolonged

Immune Response Characterization:

Parameter: Antigen-specific antibodies (IgG); Result: Trace amounts (vs. high titers with OVA protein + LPS)

Parameter: Antigen-specific CD4⁺ T cell proliferation; Result: Robust (Ag⁺ vs. Ag⁻ targets)

Parameter: Antigen-specific CD8⁺ T cell proliferation; Result: Robust

Parameter: CD69 up-regulation (CD4⁺/CD8⁺); Result: Ag-specific

Parameter: CD8⁺ T cell cytotoxicity (A20-OVA); Result: Strong

Parameter: CD8⁺ T cell cytotoxicity (wild-type A20); Result: Strong (shared antigens)

Parameter: CD8⁺ T cell cytotoxicity (CT26, irrelevant); Result: None

Parameter: Rechallenge protection; Result: Complete rejection (5/5)

Parameter: Naive mice (no prior treatment); Result: Tumor development (5/5)

Interpretation: The authors conclude that "CARTs are remarkably effective in delivering customized functional mRNAs to APCs of the immune system," and that "our delivery system and vaccination methodology represent an attractive alternative to existing LNP vaccination platforms." They demonstrate that mRNA-CART vaccines "cure established tumors" with 80% complete regression in medium-sized tumors and 40% in large tumors, using only three low doses of 3 μg mRNA + 5 μg CpG. The authors emphasize that "CARTs are a unique class of tunable, nontoxic, and dynamic delivery agents for mRNA vaccines that address the limitations of existing approaches and have clinical promise for the treatment of established tumors."
10. Limitations (Explicitly Stated or Evident):

1. Model antigen (OVA) and single tumor model: The study uses OVA as a model antigen in A20 lymphoma; efficacy against non-OVA tumor antigens or in other cancer types was not demonstrated.

2. Immunogenicity of OVA: OVA is highly immunogenic; translation to poorly immunogenic tumor-associated antigens or neoantigens may yield different results.

3. No direct comparison to other mRNA delivery platforms: While CARTs are compared to Lipofectamine and to naked mRNA, they are not directly benchmarked against leading LNP formulations in the same in vivo tumor model.

4. Preferential T cell response over antibody response: The mRNA-CART vaccine primarily induced T cell responses with "only trace amounts" of antigen-specific antibodies; this may limit efficacy against tumors that require antibody-mediated mechanisms.

5. Tumor model is lymphoma: A20 is a B cell lymphoma that may be more susceptible to immune attack than solid tumors with dense stroma or immunosuppressive microenvironments.

6. No mechanistic studies on antigen cross-presentation: The study does not definitively demonstrate whether CD8⁺ T cell responses are primed via direct transfection of DCs vs. cross-presentation.

7. CART dosing not optimized: Only one CART formulation and dose were tested; optimization of CART composition, dose, and schedule may further improve efficacy.

8. CpG dependence: The vaccine required CpG adjuvant; patients who are poor CpG responders or who have TLR9 polymorphisms may not benefit equally.

9. No toxicity data beyond prior work: While prior publications report low toxicity, this study does not include detailed toxicity assessment of multiple dosing in tumor-bearing mice.

10. Mouse model limitations: All experiments were performed in immunocompetent BALB/c mice with an implanted tumor; the model does not recapitulate the complexity of human cancer or the patient's prior therapy history.

11. CD4⁺ T cell cytotoxicity: The study observed antigen-restricted CD4⁺ T cell cytotoxicity, but the functional relevance of this observation was not fully explored.

12. No evaluation of T cell exhaustion or persistence: The study did not assess whether cured mice develop functional memory T cells beyond the rechallenge experiment or whether T cells show signs of exhaustion.

Report prepared based on the published PNAS article. For full experimental details, supplementary figures, and complete references, please refer to the original publication.

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