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Nucleic Acid Binding, Loading & Release

UV-Vis Spectrophotometry (Loading Efficiency & Quantification)

Nucleic acid concentration, loading capacity and encapsulation efficiency.

Purpose

To quantify nucleic acid concentration and calculate loading efficiency, encapsulation efficiency and complexation yield.

Standard protocol

Method 1 — Direct measurement (if the carrier doesn’t interfere)

  1. 1

    Disrupt the complex with 1% SDS or heparin.

  2. 2

    Measure absorbance at 260 nm.

  3. 3

    Calculate concentration using the extinction coefficient (e.g., dsDNA: 50 μg/mL = A260 of 1).

Method 2 — Dye-based assay (e.g., RiboGreen for RNA, PicoGreen for DNA)

  1. 1

    Prepare a standard curve with free nucleic acid.

  2. 2

    Treat samples with dye (protected from light).

  3. 3

    Measure fluorescence (Ex/Em: 480/520 nm).

  4. 4

    Back-calculate the amount of nucleic acid in the complex.

Loading capacity

(Mass of loaded nucleic acid ÷ Mass of carrier) × 100%

Encapsulation efficiency

(Actual loading ÷ Theoretical loading) × 100%

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